View Existing OSPool-Supported Containers¶
This is list of commonly used containers in the Open Science Pool. These can be used directly in your jobs or as base images if you want to define your own. Please see the pages on container overview and creating containers for detailed instructions on how to use containers and/or have Docker containers added to the OSPool's approved list.
Also note that this list is not complete. There are many images under
/cvmfs/singularity.opensciencegrid.org/ which are either project specific
or not described well enough to make this list.
Base¶
| Name | CVMFS Locations | Description |
|---|---|---|
| EL 6 | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-el6:latest | Enterprise Linux (CentOS) 6 base image Project Website Container Definition |
| EL 7 | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-el7:latest | Enterprise Linux (CentOS) 7 base image Project Website Container Definition |
| EL 8 | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-el8:latest | Enterprise Linux (CentOS) 8 base image Project Website Container Definition |
| Ubuntu 16.04 | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-ubuntu-xenial:latest | Ubuntu 16.04 (Xenial) base image Project Website Container Definition |
| Ubuntu 18.04 | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-ubuntu-18.04:latest | Ubuntu 18.04 (Bionic) base image Project Website Container Definition |
| Ubuntu 20.04 | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-ubuntu-20.04:latest | Ubuntu 20.04 (Focal) base image Project Website Container Definition |
Languages¶
| Name | CVMFS Locations | Description |
|---|---|---|
| Julia | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-julia:latest | Ubuntu based image with Julia Project Website Container Definition |
| Matlab Runtime | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-matlab-runtime:R2018b /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-matlab-runtime:R2019a /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-matlab-runtime:R2019b /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-matlab-runtime:R2020a /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-matlab-runtime:R2020b |
This is the Matlab runtime component you can use to execute compiled Matlab codes Project Website Container Definition |
| R | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-r:3.5.0 /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-r:4.0.2 |
Example for building R images Project Website Container Definition |
Project¶
| Name | CVMFS Locations | Description |
|---|---|---|
| XENONnT | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-xenon:2020.11.06 /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-xenon:2020.11.25 /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-xenon:development /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-xenon:latest /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-xenon:py38 |
Base software environment for XENONnT, including Python 3.6 and data management tools Project Website Container Definition |
| XENONnT | /cvmfs/singularity.opensciencegrid.org/xenonnt/osg_dev:latest | Base software environment for XENONnT, including Python 3.6 and data management tools Project Website Container Definition |
| XENONnT | /cvmfs/singularity.opensciencegrid.org/xenonnt/base-environment:2020.11.06 /cvmfs/singularity.opensciencegrid.org/xenonnt/base-environment:2020.11.25 /cvmfs/singularity.opensciencegrid.org/xenonnt/base-environment:development /cvmfs/singularity.opensciencegrid.org/xenonnt/base-environment:latest /cvmfs/singularity.opensciencegrid.org/xenonnt/base-environment:py38 |
Base software environment for XENONnT, including Python 3.6 and data management tools Project Website Container Definition |
| XENONnT | /cvmfs/singularity.opensciencegrid.org/xenonnt/montecarlo:development /cvmfs/singularity.opensciencegrid.org/xenonnt/montecarlo:latest |
Base software environment for XENONnT, including Python 3.6 and data management tools Project Website Container Definition |
Tools¶
| Name | CVMFS Locations | Description |
|---|---|---|
| FreeSurfer | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-freesurfer:6.0.0 /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-freesurfer:6.0.1 /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-freesurfer:7.0.0 |
A software package for the analysis and visualization of structural and functional neuroimaging data from cross-sectional or longitudinal studies Project Website Container Definition |
| GROMACS | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-gromacs:latest | A versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. Project Website Container Definition |
| GROMACS GPU | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-gromacs-gpu:latest | A versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a GPU enabled version. Project Website Container Definition |
| Quantum Espresso | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-quantum-espresso:6.6 | A suite for first-principles electronic-structure calculations and materials modeling Project Website Container Definition |
| TensorFlow | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/tensorflow:2.3 /cvmfs/singularity.opensciencegrid.org/opensciencegrid/tensorflow:latest |
TensorFlow image (CPU only) Project Website Container Definition |
| TensorFlow GPU | /cvmfs/singularity.opensciencegrid.org/opensciencegrid/tensorflow-gpu:2.2-cuda-10.1 /cvmfs/singularity.opensciencegrid.org/opensciencegrid/tensorflow-gpu:2.3-cuda-10.1 /cvmfs/singularity.opensciencegrid.org/opensciencegrid/tensorflow-gpu:latest |
TensorFlow image with GPU support Project Website Container Definition |