Skip to content
OSPool Documentation
Acknowledge the OSG
Initializing search
Home
Overview
Support And Training Resources
Managing HTC Workloads On OSG Connect
Software Examples For OSG
Additional Resources
OSPool Documentation
Home
Overview
Overview
Welcome And Account Setup
Welcome And Account Setup
Computation on the Open Science Pool
Registration and Login for OSG Connect
Generate SSH Keys and Activate Your OSG Login
Join and Use a Project in OSG Connect
Support And Training Resources
Support And Training Resources
Get Help!
Get Help!
Email, Office Hours, and 1-1 Meetings
Education And Training
Education And Training
Bi-Monthly OSG User Training (registration+materials)
Annual, Week-Long OSG User School
Other Past Training Events
Managing HTC Workloads On OSG Connect
Managing HTC Workloads On OSG Connect
HTC Workload Planning Testing Scaling Up
HTC Workload Planning Testing Scaling Up
Roadmap to HTC Workload Submission via OSG Connect
Indicate the Duration Category of Your Jobs
Determining the Amount of Resources to Request in a Submit File
Submitting HTC Workloads With HTCondor
Submitting HTC Workloads With HTCondor
Quickstart-Submit Example HTCondor Jobs
Easily Submit Multiple Jobs
Organizing and Submitting HTC Workloads
Finding OSG Locations
Troubleshooting Job Errors
Use OSG Connect Tutorials
Checkpointing Jobs
Using Software On The OSG
Using Software On The OSG
Using Software on the Open Science Pool
Control Where Your Jobs Run/Job Requirements
Compiling Software for OSG Connect
Example Software Compilation
View Existing OSPool-Supported Containers
Create/Register a Docker Container Image
Access Software using Distributed Environment Modules
Request Help with Your Software
Create a Singularity Container Image
Use Containers on the OSG
Managing Data For Jobs
Managing Data For Jobs
Overview: Data Staging and Transfer to Jobs
Use scp To Transfer Files To and From OSG Connect
Transfer Input Files Up To 100MB In Size
Transfer Job Output Files Up To 1GB In Size
Transfer Larger Input and Output Files
Transfer HTTP-available Files up to 1GB In Size
Considerations For Specific Resource Needs
Considerations For Specific Resource Needs
Using GPUs on the OSPool
Large Memory Jobs
Multicore Jobs
OpenMPI Jobs
Running OSG jobs on XSEDE
Automated Workflows
Automated Workflows
Submit Workflows with HTCondor's DAGMan
Use Pegasus to Manage Workflows on OSG Connect
Software Examples For OSG
Software Examples For OSG
Python
Python
Run Python Scripts on the OSPool
Scaling Up With HTCondor’s Queue Command
Wordcount Tutorial for Submitting Multiple Jobs
R
R
Use External Packages in your R Jobs
Run R scripts on the OSPool
Scaling up compute resources
Bioinformatics
Bioinformatics
High-Throughput BLAST
High-Throughput BWA Read Mapping
Drug Discovery
Drug Discovery
Running a Molecule Docking Job with AutoDock Vina
Matlab Runtime
Matlab Runtime
Basics of compiled MATLAB applications - Hello World example
Other Languages and Tools
Other Languages and Tools
Using Julia on the OSPool
Using conda to Run Python on the OSPool
Using Java in Jobs
Machine Learning
Machine Learning
Working with Tensorflow, GPUs, and containers
Freesurfer
Freesurfer
Introduction to FreeSurfer on the OSPool
Additional Resources
Additional Resources
References
References
Policies for Using OSG Connect and the OSPool
Frequently Asked Questions
Acknowledge the OSG
Contact OSG for non-Support Inquiries
OSG Accounting (GRACC)
Acknowledge the OSG
¶
This page has been moved to the
OSG Website
.